Package: AMDconfigurations
Type: Package
Title: Geometric Analysis of Configurations in High-Dimensional Spaces
Version: 0.4.0
Authors@R: person("Manuel", "Mendoza", role = c("aut", "cre"),
  email = "mmendoza@mncn.csic.es",
  comment = c(ORCID = "0000-0002-2143-8138"))
Description: Computes Average Membership Degree (AMD) from
        soft-membership matrices and constructs AMD curves across
        candidate configuration counts. The current curve backend uses
        repeated fuzzy c-means fits while keeping the AMD definition,
        membership estimation, curve construction, and final assignment
        as separate operations. Fitted memberships, convergence
        diagnostics, preprocessing transformations, seeds, row maps,
        and process-level reproducibility links are retained. The
        package reports numerical curve features but leaves their
        scientific interpretation to an explicitly justified analysis.
        The method was introduced by Mendoza and Araújo (2022)
        <doi:10.1111/ecog.06289>.
License: MIT + file LICENSE
URL: https://github.com/mmendoza1967/AMDconfigurations,
        https://mmendoza1967.github.io/AMDconfigurations/
BugReports: https://github.com/mmendoza1967/AMDconfigurations/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Depends: R (>= 4.1)
Imports: e1071 (>= 1.7-17), grDevices, graphics, stats, utils
Suggests: testthat (>= 3.2.0), knitr, rmarkdown, ranger (>= 0.18.0),
        digest (>= 0.6.27)
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/Needs/website: pkgdown
NeedsCompilation: no
Repository: https://mmendoza1967.r-universe.dev
Date/Publication: 2026-10-20 19:30:10 UTC
RemoteUrl: https://github.com/mmendoza1967/amdconfigurations
RemoteRef: HEAD
RemoteSha: 0b036fc2bbe772b14cee4a93253ffb8942e717ee
Packaged: 2026-10-20 19:53:16 UTC; root
Author: Manuel Mendoza [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2143-8138>)
Maintainer: Manuel Mendoza <mmendoza@mncn.csic.es>